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San Francisco Communicable Disease Report,
1986-2003
This report summarizes the epidemiological profile of notifiable disease reports collected by the Communicable Disease Control Unit (CDCU) of the San Francisco Department of Public Health from 1986-2003. Notifiable communicable disease reports managed by other SFDPH sections are not represented in this report (i.e. tuberculosis, HIV and AIDS, and other sexually transmitted diseases). The results are presented in two primary parts. The first part describes incidence trends of 12 selected diseases in San Francisco in the forms of narratives and graphs; graphical comparison of San Francisco disease rates with the Bay Area, California and the United States from 1994-2003 are also made. In addition to these 12 selected diseases of focus, the same graphical comparisons are made for 9 additional diseases without accompanying text in the second portion of results. Detailed frequency, rate and standardized incidence ratio tables for 21 diseases are located in Appendices C1-C3 and D1-D21. Annual frequencies for all notifiable communicable diseases managed by CDCU are located in Appendix B.
This report is in the public domain and may be reproduced with appropriate citation.
Suggested Citation:
Community Health Epidemiology and Disease Control Section. San Francisco Communicable Disease Report, 1986-2003 [Internet]. San Francisco, California: San Francisco Department of Public Health; 2005 May. 117 pp. Available from Communicable Disease Control & Prevention: http://www.sfcdcp.org/
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Contents of Report
I. Methods
San Francisco Data Collection
Surveillance Period
Racial and Ethnic Categorization
Demographic Data
Selection of Diseases for Trend and Detailed Analyses
Comparison Jurisdictions and Healthy People 2010 Targets
Statistical Calculations (Rates, Exact Confidence Limits for Rates, Standardized Incidence Ratios, Confidence Limits for Ratios)
Rounding Numbers
Reliability of Rates
Rules for Data Suppression
Data Limitations
Note to Users of This Report
Abbreviated Terms
II. Results
Narrative and Detailed Trend Analysis for 12 Selected Diseases
Amebiasis
Figure 1: Frequency and Rate of Amebiasis in San Francisco, 1986-2003
Figure 2: Rate of Amebiasis in San Francisco, the Bay Area, and California, 1994-2003
Campylobacteriosis
Figure 3: Frequency and Rate of Campylobacteriosis in San Francisco, 1986-2003
Figure 4: Rate of Campylobacteriosis in San Francisco, the Bay Area, and California, 1994-2003
Cryptosporidiosis
Figure 5: Frequency and Rate of Cryptosporidiosis in San Francisco, 1986-2003
Figure 6: Rate of Cryptosporidiosis in San Francisco, the Bay Area, California and United States, 1994-2003
Escherichia coli O157:H7 Infections
Figure 7: Frequency and Rate of E. coli O157:H7 Infections in San Francisco, 1986-2003
Figure 8: Rate of E. coli O157:H7 Infections in San Francisco, the Bay Area, California and United States, 1994-2003
Giardiasis
Figure 9: Frequency and Rate of Giardiasis in San Francisco, 1986-2003
Figure 10: Rate of Giardiasis in San Francisco, the Bay Area, California and United States, 1994-2003
Hepatitis A
Figure 11: Frequency and Rate of Hepatitis A in San Francisco, 1986-2003
Figure 12: Rate of Hepatitis A in San Francisco, the Bay Area, California and United States, 1994-2003
Acute Hepatitis B
Figure 13: Frequency and Rate of Acute Hepatitis B in San Francisco, 1986-2003
Figure 14: Rate of Acute Hepatitis B in San Francisco, the Bay Area, California and United States, 1994-2003
Measles
Figure 15: Frequency and Rate of Measles in San Francisco, 1986-2003
Figure 16: Rate of Measles in San Francisco, the Bay Area, California and United States, 1994-2003
Meningococcal Disease
Figure 17: Frequency and Rate of Meningococcal Disease in San Francisco, 1986-2003
Figure 18: Rate of Meningococcal Disease in San Francisco, the Bay Area, California and United States, 1994-2003
Figure 19: Meningococcal Disease by Age Group, San Francisco, 1986-2003
Pertussis
Figure 20: Frequency and Rate of Pertussis in San Francisco, 1986-2003
Figure 21: Rate of Pertussis in San Francisco, the Bay Area, California and United States, 1994-2003
Salmonellosis
Figure 22: Frequency and Rate of Salmonellosis in San Francisco, 1986-2003
Figure 23: Rate of Salmonellosis in San Francisco, the Bay Area, California and United States, 1994-2003
Shigellosis
Figure 24: Frequency and Rate of Shigellosis in San Francisco, 1986-2003
Figure 25: Rate of Shigellosis in San Francisco, the Bay Area, California and United States, 1994-2003
West Nile Disease
For the most up-to-date information for West Nile Disease, click here.
Potential Bioterrorism Agents
Table 1: Incidence of Diseases with Potential Use in Bioterrorism, San Francisco and California, 1994-2003
Trend Analysis for 9 Additional Diseases
Coccidioidomycosis
Figure 26: Frequency and Rate of Coccidioidomycosis in San Francisco, 1986-2003
Figure 27: Rate of Coccidioidomycosis in San Francisco, the Bay Area, California and United States, 1994-2003
Legionellosis
Figure 28: Frequency and Rate of Legionellosis in San Francisco, 1986-2003
Figure 29: Rate of Legionellosis in San Francisco, the Bay Area, California and United States, 1994-2003
Listeriosis
Figure 30: Frequency and Rate of Listeriosis in San Francisco, 1986-2003
Figure 31: Rate of Listeriosis in San Francisco, the Bay Area, California and United States, 1994-2003
Lyme Disease
Figure 32: Frequency and Rate of Lyme Disease in San Francisco, 1986-2003
Figure 33: Rate of Lyme Disease in San Francisco, the Bay Area, California and United States, 1994-2003
Malaria
Figure 34: Frequency and Rate of Malaria in San Francisco, 1986-2003
Figure 35: Rate of Malaria in San Francisco, the Bay Area, California and United States, 1994-2003
Mumps
Figure 36: Frequency and Rate of Mumps in San Francisco, 1986-2003
Figure 37: Rate of Mumps in San Francisco, the Bay Area, California and United States, 1994-2003
Acute Typhoid Fever
Figure 38: Frequency and Rate of Acute Typhoid Fever in San Francisco, 1986-2003
Figure 39: Rate of Acute Typhoid Fever in San Francisco, the Bay Area, California and United States, 1994-2003
Vibriosis
Figure 40: Frequency and Rate of Vibriosis in San Francisco, 1986-2003
Figure 41: Rate of Vibriosis in San Francisco, the Bay Area, California and United States, 1994-2003
Viral Meningitis
Figure 42: Frequency and Rate of Viral Meningitis in San Francisco, 1986-2003
Figure 43: Rate of Viral Meningitis in San Francisco, the Bay Area, California and United States, 1994-2003
III. Appendices
Appendix A: Bibliography of References.
Appendix B: Frequency of Reportable Diseases in San Francisco, 1986-2003
Appendix C1: Frequency and Unadjusted Rates for 21 Selected Diseases by Age, San Francisco, 1986-2003
Appendix C2: Frequency and Unadjusted Rates for 21 Selected Diseases by Sex, San Francisco, 1986-2003
Appendix C3: Frequency and Unadjusted Rates for 21 Selected Diseases by Race/Ethnicity, San Francisco, 1986-2003
Appendix D1: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Amebiasis: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D2: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Campylobacteriosis: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D3: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Coccidioidomycosis: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D4: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Cryptosporidiosis: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D5: Frequency, Unadjusted Rates and Standardized Incidence Ratios for E. coli O157:H7 Infections: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D6: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Giardiasis: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D7: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Hepatitis A: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D8: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Acute Hepatitis B: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D9: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Legionellosis: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D10: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Listeriosis: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D11: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Lyme Disease: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D12: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Malaria: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D13: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Measles: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D14: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Meningococcal Disease: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D15: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Mumps: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D16: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Pertussis: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D17: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Salmonellosis: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D18: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Shigellosis: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D19: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Acute Typhoid Fever: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D20: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Vibriosis: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix D21: Frequency, Unadjusted Rates and Standardized Incidence Ratios for Viral Meningitis: San Francisco, the Bay Area, California and United States, 1994-2003
Appendix E: San Francisco Population Estimates by Age, Sex and Race/Ethnicity, 1986-2003 Source: California Department of Finance, Demographic Research Unit.
Acknowledgements:
This report was prepared by Scott Nabity, MPH, with significant contributions from numerous SFDPH staff and community partners, past and present. Sandra Huang, MD, Tomás Aragón, MD, DrPH, Rita Shiau, MPH, and Randy Reiter, PhD, MPH, contributed to the analysis plan, selection of analytic methods, interpretation and critical review of the report. Karen Holbrook, MD, MPH, and Magdalena Berger, MPH, wrote portions of the interpretive text. Diane Portnoy, MPH, Susan Fernyak, MD, MPH, Yeva Johnson, MD, June Weintraub, ScD, Amy Pine, MPH, and Janet Zola, MPH, helped interpret and critically review the results. Communicable Disease Control Unit (CDCU) staff (Ishmael Bihl, Robin Buckley, Jorge Córdoba, Stacey Davis, MPH, Ben Dockett, Quijuan Maloof and Joyce Ycasas, MPH), former CDCU staff, Jennifer Pederson of the Communicable Disease Prevention Unit, and staff of the California Emerging Infections Program are recognized for their crucial surveillance and data collection efforts. Jackvin Ng, Proceso Hernandez and Xiaoxia Zhu developed, managed and supported the communicable disease data systems. Reports from clinicians and laboratorians made these data available for analysis and distribution.
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